published on Sun Nov 25 05:00:46 2007 in packages-news
Article submitted by Gandalf Lechner. Please help DPOTD by submitting good articles about software you like!
So you work in a scientific environment and wonder how to organize bibliographic data, downloaded articles/preprints and links to online papers in such a way that…
- …you can easily browse through your collection of articles and search for particular publications
- …you can automate the process of creating citations and references when typing your own articles in LaTeX
- …you can include new articles in your collection from online repositories with a few clicks
- …you keep full control over the stored data by being able to access the BibTeX “source” at any time
Then KBibTeX is the program you are looking for. It uses the BibTeX format to store bibliographic data and provides a nice KDE interface to search through your BibTeX files. Its main window looks like this:
Managing your References
Since you can sort your data by various criteria such as author, title, year or journal, you will usually find the article you are looking for instantly. You then have the choice of either checking the reference data and abstract directly within KBibTeX, or opening the associated URL or pdf file. This provides the basic functionality necessary for using KBibTeX as a frontend to your collection of articles. More advanced features include the possibilities to attach keywords (tags) to articles, or to carry out online searches for a given paper, using Citebase, Google, Google Scholar, PubMed, Scientific Commons or SpringerLink, to name just a few available search methods.
Adding new articles manually…
In KBibTeX, you can add new bibliographic data to your collection in two ways, either manually or automatically by using online article repositories. If you add new papers manually, you have a multitude of possibilities for configuring the input - from basics such as the kind of BibTeX entry (article, book, IEEE, PhDThesis, Unpublished, …) over all the usual BibTeX data (authors, editors, journal, publication date, pages, ISBN, publisher, institution, …) to more advanced information such as keywords, abstracts, digital object identifiers (DOI), associated URLs and PDF files, and entirely user-defined fields.
…or automatically: Integration of online databases
One feature I particularly like about KBibTeX is the growing number of online article databases it supports. In version 0.2, the list includes PubMed, BibSonomy, SPIRES, Zentralblatt MATH, Citebase, DBLP and Amatex, which makes the program useful for people working in many different subjects, such as medicine, physics, mathematics or computer science. In the screenshot below you see how easily a SPIRES search is carried out within KBibTeX, and how the found bibliographic data can be imported into your BibTeX file.
Citation manager and interaction with LyX/Kile
One main field of use for KBibTeX is its ability to greatly assist you with creating citations in LaTeX documents. When typing a document using an editor such as Kile (or LyX), just select the articles you want to cite within KBibTeX and send them to the editor using a drop down menu or a hot key:
In particular, you don’t have to care about tedious BibTeX identifiers any more, since these are effectively administered by KBibTeX.
What people used to editing their BibTeX files manually will like is that this possibility still exists in KBibTeX - by switching to Source View you can always adjust your BibTeX data manually if you like.
By strictly adhering to the BibTeX format, files edited by KBibTeX are also open for use with any other program understanding BibTeX.
For Linux users working frequently with LaTeX and BibTeX, KBibTeX offers many nice features which can greatly simplify otherwise tedious and time consuming tasks. In view of its bibliography manager functions, KBibTeX is right now the best approximation to the great - but unfortunately still non-existing - KPapers. Hopefully it will develop further in this direction in the near future…
KBibTeX 0.1.5 is available in Debian ‘Etch’ (stable) and Ubuntu. The fresh version 0.2, which has numerous improvements over 0.1.5, should soon be available as Debian or Ubuntu packages, too. In the meantime, you can of course grab the source code and compile it, which is a quick “configure - make - sudo make install” mission.
published on Wed Nov 21 05:00:58 2007 in packages-news
Article submitted by Folkert van Heusden. Please help DPOTD by submitting good articles about software you like!
So there you are. You’re an average geek with a nice cluster of Linux systems. All configured to act together in whatever you’re doing with it.
Example 1: Your systems are connected via a fast pipe to the Internet. And since systems on the Internet are cracked on an almost hourly basis, you want your logging on all systems to be correct enabling you to contact the abuse center of the ISP of that script kiddie. For that you want correct timestamps in your logging. You want to know exactly when that cracker started his attacks.
Example 2: Besides being a cluster on the Internet, your cluster also acts as a software-building cluster, all connected via NFS shares and executed using make. For make to do its thing, the time on all nodes of your cluster must be equal or else files will be skipped.
Example 3: You’re a very environment friendly IT expert. You always travel by train to your customers. For this you need to know exactly how late it is so that you can jump on your bicycle and be at the train station just in time for that train.
For all of these examples you could get your watch and try to configure your systems to exactly the same time. That’s a bit of a challenge because typing the time takes time and interpreting the time on your watch (by your brain) takes time as well. Also, when the time is finally set, you’re not there: PCs have notoriously bad CMOS clocks with an enormous drift. That means that in a few days the clock of your system might be way off.
Now, there is a solution for all of these problems. One solution that takes care of it all and even more. The solution is called NTP. NTP stands for Network Time Protocol. An NTP daemon will determine the drift of the clock of your PC and then disciplines it up to the point that you can be sure it won’t be off. Also when connecting multiple systems, the NTP instances on each system can talk to each other (or a central NTP server) so that all of them correct their own time against each other! That solves example 2 and 3, but what about example 1: the problem that you would like to have the time of your PC to be the same as the rest of the Internet? For that, NTP can synchronize itself to time servers on the Internet.
Quite a few ISPs have a system set up in their network connected to a GPS or DCF77 receiver or something similar to which their customers can sync their computers. If your system gets cracked, you know for sure that the timestamps in the logging of your systems is the same as the ones of your ISP and, hopefully, of the ISP of the cracker as well.
If your ISP does not provide time servers (normally you should have between 3 and 6 upstream servers to ensure accurate time), you can let your local NTP daemon synchronize to the NTP pool project as well. The NTP pool project consists of volunteers with a static IP address and an NTP daemon that either synchronizes to steady trustworthy time sources (stratum 1). The NTP daemon included in Debian syncs by default to the NTP pool project.
With all the new Debian (and other Linux distributions) being installed the NTP Pool is under constant pressure to handle more traffic. If you have a static IP address and a stable server, please consider adding your server and help out!
NTP is included in all Debian and Ubuntu releases, and can be enabled or disabled via a checkbox on your Set Date/Time dialog.
Ministry of Education from Brazil is buying 90,000 Debian GNU Linux computers, with compatible wireless cards, wireless routers, laser printers.
contributed by andremachado, published on Wed Nov 21 00:03:38 2007 in success-stories
At October 22nd, 2007, the Ministry of Education from Brazil executed a bidding, using its government virtual trading room, for the aquisition of 90 thousand computers with Debian GNU / Linux 4 pre-installed (item 220.127.116.11 of the edictal) as well as wireless cards, wireless routers, laser printers, all Debian GNU / Linux 4 compatible.
All computers will be installed at 9000 brazilian schools.
The fully working Debian GNU / Linux 4 installed may be lightly customized (pre-configurations and specified applications) for the equipments, or an already customized Debian GNU / Linux available at the Ministry site could be used .
The total compatibility with Debian GNU / Linux 4 must be proven, tested and demonstrated, through a test using some blank hard-disk machines delivered to the Ministry of Education.
The winners will made available a customized Debian GNU / Linux 4 image with the desktop applications specified.
The bidding 452007 process 23034.040575/2007-58 of FUNDO NACIONAL DE DESENVOLVIMENTO DA EDUCACAO - FNDE, MINISTERIO DA EDUCACAO, BRASIL, is not finished yet, as the initial winners will have to go through a series of steps to ensure and prove that meet strict compliance to all conditions of the 103 page detailed edictal and it can take months.
Other companies who took part in the bidding could still appeal from the decisions and this could take even longer.
The bidding 452007 could be tracked at the brazilian government bidding site ComprasNet using the following navigation sequence:
ComprasNet > Acesso Livre > "Consulta ata" > select "Pregao Eletronico", Select "Situacao = todas", select "Cod. UASG = 153173 > 452007
Debian GNU/Linux is a free operating system, developed by more than a thousand volunteers from all over the world who collaborate via the Internet.
Debian's dedication to Free Software, its non-profit nature, and its open development model make it unique among GNU/Linux distributions.
The Debian project's key strengths are its volunteer base, its dedication to the Debian Social Contract, and its commitment to provide the best operating system possible.
published on Sun Nov 18 05:00:20 2007 in packages-news
Article submitted by Christian Haase. We are running out of articles! Please help DPOTD and submit good articles about software you like!
AMOR is a nice toy which is absolutely senseless. It displays a tiny figure on your desktop, running on top of your windows or falling down to the bottom. It is a KDE application, but it should be no problem to use it in Gnome (as I do).
In the package are several figures such as the FreeBSD-Daemon, and Tux (in 2 variations). There are also things like a ghost flown from a castle and some more. Some creatures are only static (the FreeBSD-Daemon, Little Billy, and the classic Tux), but the rest are animated. An list of the available themes is provided here.
If you like to see some tips, AMOR also supplies 2 kinds of speech bubbles for them. The first kind are the KDE-Tips and the second kind are for application related hints. Unfortunately there appear to be no applications making use of this second functionality.
The configuration is very simple. Just catch the creature to open the context-menu and choose to open the configuration-dialog.
Overall, as said by the name too, it is an “Amusing Misuse Of Resources”, but I do like the jumping glyphs while working.
AMOR was written by Martin R. Jones and Gerardo Puga. AMOR is in Debian from oldstable to unstable for the common architectures and in Ubuntu from dapper to hardy for amd64, i386 and powerpc. It depends only on some basic kde-libs (kdelibs4c2a, kdelibs-data, libqt3-mt) which are already installed on many systems. If you want to keep your non-KDE system clean try the “-s”-option of aptitude first and decide for yourself.
published on Wed Nov 14 05:00:23 2007 in packages-news
Article submitted by Jared Raddigan. Please help DPOTD by submitting good articles about software you like!
Passwords can be a headache to remember, especially good, long passwords. Well, luckily for us Tom Van Vleck agrees, so he wrote a program to make pronounceable passwords up to 99 characters long.
Where do I primarily use this program? I use this program when trying to come up with WPA2 personal keys. I want the password to be good enough to protect the wireless network, but I don’t want it to be so good that I can never remember or type it in correctly. It’s amazing when you can pronounce something how much easier it is to remember and how much happier your end users are.
You can also use it for your email account, for storing your confidential data and, of course, for your GNU/Linux account! Using gpw is very easy:
$ gpw [number of passwords] [length of passwords]
So to make 5 passwords with the length of 12 characters just do
$ gpw 5 12
I usually run the command a number of times until I find a password that fits my needs the best.
In high security situations passwords are no longer acceptable, but when a password is needed, this is a good way to get a decent password that’s much better than using your dog’s name or the ever elusive “password” password. If you really want to increase security while still using a password, just change the length to something like 20 characters or above and then you can say that you no longer use passwords and switched to pass phrases and impress all your friends.
You will find gpw in both all versions of Debian and Ubuntu
Update: as mentioned in the comments, you can also check out pwgen. It is another password generator that creates somewhat pronunceable passwords, but can also generate them with symbols and numbers, and doens’t use any dictionary.
published on Sun Nov 11 05:00:27 2007 in packages-news
Article submitted by Alex Chekholko. Please help DPOTD by submitting good articles about software you like!
We recently ran a review on Deborphan. Here is a review on a similar tool: Debfoster. Debfoster exists to tell you which packages are installed on your machine merely as dependencies for other packages. It then gives you the option of removing the package and its dependencies. It also remembers your previous responses so that it does not ask you about the same packages each time.
Debfoster is most useful to keep your system very lean. However, with today’s large disks, it is more of an aesthetic utility.
The use of Debfoster is best illustrated by a simple example. See the manpage for more details. This example assumes that you already ran Debfoster and told it to keep all your existing packages, otherwise it will ask you about all of them.
I will look at the dependencies for a package called munin, then install it (and its dependencies), then use Debfoster to remove it.
$ apt-cache show munin
Maintainer: Ubuntu MOTU Developers
Original-Maintainer: Munin Debian Maintainers
Depends: perl (>= 5.6.0-16), perl-modules (>= 5.8.0) |
libparse-recdescent-perl, librrds-perl, libhtml-template-perl,
libdigest-md5-perl, libtime-hires-perl, libstorable-perl, rrdtool,
Recommends: munin-node, libdate-manip-perl
Suggests: www-browser, httpd
$ sudo apt-get install munin
Reading package lists… Done
Building dependency tree
Reading state information… Done
The following extra packages will be installed:
libhtml-template-perl librrd2 librrds-perl rrdtool
The following NEW packages will be installed:
libhtml-template-perl librrd2 librrds-perl munin rrdtool
0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
$ sudo debfoster
munin is keeping the following 4 packages installed:
libhtml-template-perl librrd2 librrds-perl rrdtool
Keep munin? [Ynpsiuqx?], [H]elp: N
Keep librrds-perl? [Ynpsiuqx?], [H]elp: N
rrdtool is keeping the following 1 packages installed:
Keep rrdtool? [Ynpsiuqx?], [H]elp: N
Keep libhtml-template-perl? [Ynpsiuqx?], [H]elp: N
Keep librrd2? [Ynpsiuqx?], [H]elp: N
Reading package lists… Done
Building dependency tree
Reading state information… Done
The following packages will be REMOVED:
libhtml-template-perl* librrd2* librrds-perl* munin* rrdtool*
0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded.
As you can see, Debfoster can help you clean up the packages that were
installed as dependencies. However, this functionality also exists in
aptitude and synaptic. Current versions of Aptitude or Synaptic will auto-remove the packages that were
installed as dependencies, negating the need for Debfoster. See Google: “aptitude vs apt-get” for more info.
Debfoster in all supported versions of Debian and Ubuntu.
published on Wed Nov 7 05:00:52 2007 in packages-news
Article submitted by Vasiliy Faronov. We are running out of articles! Please help DPOTD and submit good articles about software you like!
When working at my PC, I often forget that I need to do something, say, in ten minutes. Therefore, I need an easy way to set up a reminder and be prodded when the time elapses. timer-applet is a small applet for the GNOME panel that does this.
The applet takes the form of a small button sitting on the panel. When you click it, the timer setup dialog box appears.
You may just enter the time after which you want to be reminded and click “Start Timer”. You can also set a name for the timer; it will be shown to you when the timer finishes, so you don’t have to painfully recall what you are to do. If your needs are more complex, you can set up multiple timer presets.
After you click “Start Timer”, the countdown begins. The panel button shows the time remaining. Clicking the button will pause the timer; clicking it again will allow you to continue the countdown or start it over.
Once the chosen time period elapses, the applet notifies you with a bubble, and the button begins to flash.
timer-applet is actively maintained and has a web site. It has been available in Debian since etch and in Ubuntu since dapper. Ubuntu gutsy features the 2.0 version of timer-applet which has a slightly better user interface.
The obvious downside of timer-applet is that it is only useful in GNOME environments. KDE users might want to check out the package kalarm (from KDE’s PIM suite). Also, the packages teatime and kteatime may be useful if you specifically need a tea timer.
published on Sun Nov 4 05:00:50 2007 in packages-news
Article submitted by Vincent Fourmond. We are running out of articles! Please help DPOTD and submit good articles about software you like!
Torus-trooper is a pretty nice abstract shoot-’em-up taking place in what could be called a space tunnel. You drive some kind of ship or car who has to stay on the sides of the tunnel, and shoot bad enemies. This game is pretty neat and original in several ways:
- You don’t have lives or energy. Rather, you have a limited amount of time to spend in the tunnel. Every time you kill some (big) enemies, you may gain 15, 30 or 45 seconds. Every time you get shot, you loose 15 seconds.
- In addition to shooting, you can build up a kind of charge by pressing the x key. When you release that charge, it runs in front of you, destroying enemy ships and absorbing enemy shots - the latter adding significant amount to your score. One thing though: building the charge slows you down considerably.
- It is pretty fast-paced, rather faster than anything else I’ve seen, and quite neatly designed.
- I like the idea of the tunnel!
When you start the game, you can ask for full screen mode (which makes you feel more “into” the game) with the -fullscreen option. After that, you get a menu where you choose the level and start playing with the fire key. You can also see your last game re-played with the alt key.
Once in the game, you need few keys: arrows, or wasd for movement and acceleration; z for normal firing and x for charge shooting. esc will take you out of the game and p will pause it, as expected.
Some screen shots
Torus-trooper is available in Debian testing, but it still hasn’t made its way into Ubuntu.